photon_mosaic.rules.suite2p_run#

Functions

run_suite2p(tiff_file, stat_path, bin_path, ...)

This function runs Suite2P on a given TIFF file and saves the results in the specified paths.
photon_mosaic.rules.suite2p_run.run_suite2p(tiff_file, stat_path, bin_path, dataset_folder, user_ops_dict=None)[source]#

This function runs Suite2P on a given TIFF file and saves the results in the specified paths. It also handles any exceptions that may occur during the process and logs them in an error file.

Parameters:

  • tiff_file (str) – The path to the TIFF file to be processed.

  • stat_path (str) – The path where the Suite2P statistics will be saved.

  • bin_path (str) – The path where the Suite2P binary data will be saved.

  • dataset_folder (str) – The path to the folder containing the dataset.

  • user_ops_dict (dict, optional) – A dictionary containing user-provided options to override the default Suite2P options. The default is None.

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