API Reference

This section contains automatically generated documentation for the photon-mosaic package.

Modules

photon_mosaic.cli	Command line interface for photon-mosaic.
photon_mosaic.dataset_discovery	Dataset discovery module.
photon_mosaic.pathing	Pathing utilities for photon-mosaic.
photon_mosaic.preprocessing.contrast	Contrast enhancement preprocessing step.
photon_mosaic.preprocessing.derotation	Derotation preprocessing step for photon-mosaic.
photon_mosaic.preprocessing.noop	No-operation preprocessing step for photon-mosaic.
photon_mosaic.rules.preprocessing	Snakemake rule for preprocessing image data.
photon_mosaic.rules.suite2p_run	Snakemake rule for running Suite2P.